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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9882768_9883542_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9882768 - 9883542
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGCAAA
U12 Branch Point Sequence:
TGTGCACTAGCA
Flanking Amino Acid:
KTDGSLYRFQTPYFWPTQSW
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
47.9
-0.1
1.3
54.7
39
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
45
-0.3
2.2
62.45
43.1

Associated Gene:

Gene:
RGS9
Ensembl Gene ID:
ENSAPLG00000011394
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027941
9860321 - 9892037
31717
ENSAPLT00000012020
9860321 - 9892037
31717