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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9885545_9886485_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9885545 - 9886485
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTAACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAC
U12 Branch Point Sequence:
TTTCCCTTAACT
Flanking Amino Acid:
MITNIPHAVAEAEAQRFKAV
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
64.7
0.37
1.1
67.2
35.2
Major PPT
73.1
0.52
0.9
66.3
33.2
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
92.4
1.41
0.8
102
22.5

Associated Gene:

Gene:
RGS9
Ensembl Gene ID:
ENSAPLG00000011394
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027941
9860321 - 9892037
31717