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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9917424_9922128_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9917424 - 9922128
Intron Length:
4705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
ACTCCTTTATTT
Flanking Amino Acid:
LDNLDKLGEQDYLPSQQDIL
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
89.3
0.88
0.7
89
27.8
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
57.9
0.33
1.6
71.31
40.3

Associated Gene:

Gene:
GNA13
Ensembl Gene ID:
ENSAPLG00000030399
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026581
9897655 - 9925314
27660