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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9947322_9949193_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9947322 - 9949193
Intron Length:
1872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TTTTAGTTACGC
Flanking Amino Acid:
DMYVTIGLVSAITALKEQIG
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
85.1
0.79
0.7
84.2
23.8
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
44.9
-0.4
2.6
66.9
44.9

Associated Gene:

Gene:
SLC16A6
Ensembl Gene ID:
ENSAPLG00000009413
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009812
9945616 - 9950167
4552