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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9948612_9949193_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9948612 - 9949193
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CATTTATTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGGCATTTATT
Flanking Amino Acid:
DMYVTIGLVSGLGYCLSFLP
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.7
0.65
0.9
72.6
36.3
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
49.9
0.07
2
72.78
44.3

Associated Gene:

Gene:
SLC16A6
Ensembl Gene ID:
ENSAPLG00000009413
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029570
9944682 - 9950786
6105