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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9965600_9966542_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9965600 - 9966542
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
QAAGYSTGAIGKWHLGHHGR
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
ARSG
Ensembl Gene ID:
ENSAPLG00000009369
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009772
9964260 - 9970617
6358