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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9967109_9969194_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9967109 - 9969194
Intron Length:
2086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
CCAACCTGAATT
Flanking Amino Acid:
EAAARFVQRASDSGRPFFLY
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
79.9
0.67
0.8
73.8
31.3
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
56.4
0.28
1.5
66.4
44.2

Associated Gene:

Gene:
ARSG
Ensembl Gene ID:
ENSAPLG00000009369
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009772
9964260 - 9970617
6358