About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9970021_9970188_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9970021 - 9970188
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTGGGGGGG
5'SS Class:
weak_major
3'SS Sequence:
GTCATTAAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATTAAAA
Flanking Amino Acid:
AWQRTRGDLVTQQSLFSPKI
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.7
0.11
1.1
41.2
39.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
56.7
0.15
1
52.2
40.7
Minor 5ss
23.6
-3
3.5
28.9
39
Minor BPS
67.9
0.56
1.7
78.2
37.9

Associated Gene:

Gene:
ARSG
Ensembl Gene ID:
ENSAPLG00000009369
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009772
9964260 - 9970617
6358