Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9976008_9976790_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9976008 - 9976790

Intron Length:

783

Sequence Information:

Terminal Dinucleotides:

GT-TG

5'SS Sequence:

CCT|GTGAGCATT

5'SS Class:

major

3'SS Sequence:

TTTACATATCCTG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTTTACATATCC

Flanking Amino Acid:

CLDDENEFPPLLELSLKKEE

Intron Amino Acid Position:

354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.7

0.42

1.1

71.2

40.3

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

42.4

-0.4

3.2

59.5

45.3

Minor 5ss

42.8

-0.8

3.1

67.6

43.1

Minor BPS

55.8

0.16

2.1

76.72

38.9

Associated Gene:

Gene:

WIPI1

Ensembl Gene ID:

ENSAPLG00000009001

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009381

9975476 - 9983353

7878