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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9976892_9977583_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9976892 - 9977583
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATCCATTTATCA
Flanking Amino Acid:
STVPSTSTMPGYSEDGGALR
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.5
0.57
1
72.5
37.5
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
48.7
-0.1
1.7
60.02
39.8

Associated Gene:

Gene:
WIPI1
Ensembl Gene ID:
ENSAPLG00000009001
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033157
9974402 - 9983353
8952
ENSAPLT00000009381
9975476 - 9983353
7878