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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9979072_9979261_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9979072 - 9979261
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTACGTATT
5'SS Class:
major
3'SS Sequence:
CTTTTCATGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGCTTTTCATGT
Flanking Amino Acid:
SGQRNVCALSTIQKLPRLLV
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.3
82
38.1
Major BPS
100
1.24
0.5
100
0
Major PPT
73.8
0.54
0.9
74.5
35
Minor 5ss
42
-0.9
3.1
58.9
39.1
Minor BPS
43.8
-0.3
2
59.7
44.3

Associated Gene:

Gene:
WIPI1
Ensembl Gene ID:
ENSAPLG00000009001
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033157
9974402 - 9983353
8952
ENSAPLT00000009381
9975476 - 9983353
7878