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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9991061_9991420_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9991061 - 9991420
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCTGT
5'SS Class:
major
3'SS Sequence:
CCTGTCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCTTCCTCACCG
Flanking Amino Acid:
DMRDFSTVSADYSQDEKALL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.1
42.1
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
79.5
0.66
0.8
72.8
32
Minor 5ss
40.6
-1
3.1
56.3
47.9
Minor BPS
51.6
-0
2
59.08
48.4

Associated Gene:

Gene:
FAM20A
Ensembl Gene ID:
ENSAPLG00000008490
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008834
9990616 - 9997516
6901