About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9991472_9991678_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9991472 - 9991678
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
ATTTCCTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCCAATTTAAGC
Flanking Amino Acid:
ALLGACDCSQIVKPSGVHLK
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
62.1
38.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
78.7
0.65
0.8
70.4
35.6
Minor 5ss
27.9
-2.5
3
27.6
37.5
Minor BPS
47.7
-0.1
1.8
55.25
43.3

Associated Gene:

Gene:
FAM20A
Ensembl Gene ID:
ENSAPLG00000008490
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008834
9990616 - 9997516
6901