About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_999224_1002068_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
999224 - 1002068
Intron Length:
2845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TCCTCCTATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTCCTCCTATGC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.3
70.1
43.1
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
77.9
0.63
0.8
73
30.7
Minor 5ss
45.7
-0.5
2.8
62.9
41.8
Minor BPS
43.1
-0.5
2.1
55.69
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003696
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003783
987601 - 1094465
106865