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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_9994750_9994826_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9994750 - 9994826
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGCAG
5'SS Class:
major
3'SS Sequence:
TCCTTACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CCCTCCTTACCT
Flanking Amino Acid:
GFLLHLDNARGFGRHSHDET
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
56.5
44.1
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
79.8
0.67
0.8
73.8
30.1
Minor 5ss
24.2
-3
3
21.1
37.4
Minor BPS
65.1
0.55
1.7
75.03
47.8

Associated Gene:

Gene:
FAM20A
Ensembl Gene ID:
ENSAPLG00000008490
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008834
9990616 - 9997516
6901