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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10011925_10012633_F

Intron Information:

Intron Rank:
148967
Intron Class:
major
Intron Phase:
Intron Coordinates:
10011925 - 10012633
Intron Length:
709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTCTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTGTTTCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
77.6
0.62
1
82.8
32.6
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
55.5
0.25
1.7
76.7
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030132
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038575
10011712 - 10014906
3195