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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10012666_10014858_F

Intron Information:

Intron Rank:
148968
Intron Class:
major
Intron Phase:
Intron Coordinates:
10012666 - 10014858
Intron Length:
2193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TAGGTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
49.2
0.02
1.6
63.61
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030132
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038575
10011712 - 10014906
3195