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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100253693_100267088_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
100253693 - 100267088
Intron Length:
13396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TCTTCCCCCACT
Flanking Amino Acid:
AVIVNKRNSRGSRLRQEDFP
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
49.4
0.03
2.3
76.94
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029724
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034860
100071351 - 100267499
196149