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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100466314_100466553_R

Intron Information:

Intron Rank:
138435
Intron Class:
major
Intron Phase:
Intron Coordinates:
100466314 - 100466553
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGATT
5'SS Class:
strong_major
3'SS Sequence:
TTCACTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGTTCACTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
84.9
32.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
80.5
0.69
0.9
77.7
35.2
Minor 5ss
37.6
-1.4
3.5
56.9
47.4
Minor BPS
48.6
-0
2.1
74.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022003
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018701
100375901 - 100466931
91031