About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100484137_100486130_R

Intron Information:

Intron Rank:
141681
Intron Class:
major
Intron Phase:
Intron Coordinates:
100484137 - 100486130
Intron Length:
1994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TAATCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAAGCACTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.3
32.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.3
0.5
0.9
65.8
35.5
Minor 5ss
30.9
-2.2
3.4
38.5
41.1
Minor BPS
46.8
-0.2
2
58.66
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023572
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028653
100482667 - 100486783
4117