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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100505777_100517010_F

Intron Information:

Intron Rank:
141947
Intron Class:
major
Intron Phase:
Intron Coordinates:
100505777 - 100517010
Intron Length:
11234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GTTTCCTCACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
75.3
0.57
0.8
69.4
29.8
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
63.3
0.41
1.9
76.68
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026418
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037059
100505277 - 100518545
13269