About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100766854_100769754_F

Intron Information:

Intron Rank:
146966
Intron Class:
major
Intron Phase:
Intron Coordinates:
100766854 - 100769754
Intron Length:
2901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCAC
5'SS Class:
major
3'SS Sequence:
TTTTATGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TACATTTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
65.3
40.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87
0.83
0.8
84.8
35.4
Minor 5ss
33.5
-1.9
3.1
44.4
43.4
Minor BPS
46.1
-0.2
1.8
60.64
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029151
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025302
100766660 - 100770109
3450