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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100766884_100772098_F

Intron Information:

Intron Rank:
146968
Intron Class:
major
Intron Phase:
Intron Coordinates:
100766884 - 100772098
Intron Length:
5215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TTCTTTCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATATGTTTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.1
32.7
Major BPS
80
0.75
1
78.6
31
Major PPT
85.8
0.8
0.6
84.9
22.8
Minor 5ss
43.8
-0.7
2.4
52.2
38.6
Minor BPS
61.7
0.23
1.8
66.41
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029151
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043128
100766064 - 100773093
7030