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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100778333_100924086_R

Intron Information:

Intron Rank:
144107
Intron Class:
major
Intron Phase:
Intron Coordinates:
100778333 - 100924086
Intron Length:
145754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTCATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.2
0.54
1
79.3
33
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
62.4
0.47
1.9
82.13
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024777
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029287
100777656 - 100941828
164173