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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100829271_100924086_R

Intron Information:

Intron Rank:
144109
Intron Class:
major
Intron Phase:
Intron Coordinates:
100829271 - 100924086
Intron Length:
94816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGATTCATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
100
1.24
0.5
100
0
Major PPT
65.4
0.35
1
63.9
42.4
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
49.6
0.05
2.2
79.14
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024777
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038916
100828411 - 100941828
113418