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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100862493_100924086_R

Intron Information:

Intron Rank:
144113
Intron Class:
major
Intron Phase:
Intron Coordinates:
100862493 - 100924086
Intron Length:
61594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
TGAGTTTCAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
86.8
0.83
0.7
84.6
30.4
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
44.5
-0.4
1.8
51.24
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024777
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044651
100862320 - 100941828
79509