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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10088437_10088533_F

Intron Information:

Intron Rank:
150320
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
10088437 - 10088533
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
ATACTACGCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTTCTGATAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
56.7
0.15
1
48.2
39.9
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
49.4
-0
1.8
63.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030788
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041848
10085181 - 10088821
3641