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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10088437_10099648_F

Intron Information:

Intron Rank:
150318
Intron Class:
major
Intron Phase:
Intron Coordinates:
10088437 - 10099648
Intron Length:
11212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGATTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81
0.7
0.9
72.7
42.2
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
56.1
0.17
1.9
70.17
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030788
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024787
10088157 - 10099912
11756