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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_10088437_10115329_F

Intron Information:

Intron Rank:
150317
Intron Class:
major
Intron Phase:
Intron Coordinates:
10088437 - 10115329
Intron Length:
26893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATTTTGAAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
83.9
0.76
0.6
78.2
30.7
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
44.4
-0.3
2.4
70.34
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030788
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023843
10088324 - 10116068
27745