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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100897288_100924086_R

Intron Information:

Intron Rank:
144111
Intron Class:
major
Intron Phase:
Intron Coordinates:
100897288 - 100924086
Intron Length:
26799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CATGTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
TTTTCCTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
72.8
0.51
0.9
69.5
41.3
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
89
1.09
1
87.41
29.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024777
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043298
100896220 - 100941828
45609