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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100908736_100924086_R

Intron Information:

Intron Rank:
144115
Intron Class:
major
Intron Phase:
Intron Coordinates:
100908736 - 100924086
Intron Length:
15351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTCTATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
80.4
0.68
0.8
72.6
37.5
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
60.8
0.34
1.6
70.66
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024777
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047958
100906746 - 100941828
35083