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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100923408_100924086_R

Intron Information:

Intron Rank:
144105
Intron Class:
major
Intron Phase:
Intron Coordinates:
100923408 - 100924086
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTCATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
69.2
0.43
1.1
65.6
44.4
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
60.6
0.41
1.9
81.12
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024777
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027107
100923391 - 100941828
18438