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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100924198_100941288_R

Intron Information:

Intron Rank:
144095
Intron Class:
major
Intron Phase:
Intron Coordinates:
100924198 - 100941288
Intron Length:
17091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTATATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.9
0.76
0.8
80.9
30.1
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
70.9
0.73
1.6
89.12
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024777
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027107
100923391 - 100941828
18438
ENSAPLT00000044651
100862320 - 100941828
79509
ENSAPLT00000025772
100746188 - 100941828
195641
ENSAPLT00000043298
100896220 - 100941828
45609
ENSAPLT00000023927
100862320 - 100941828
79509
ENSAPLT00000038916
100828411 - 100941828
113418
ENSAPLT00000023823
100896288 - 100941828
45541
ENSAPLT00000029287
100777656 - 100941828
164173
ENSAPLT00000047958
100906746 - 100941828
35083