About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100926337_100926428_R

Intron Information:

Intron Rank:
144102
Intron Class:
major
Intron Phase:
Intron Coordinates:
100926337 - 100926428
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGCAC
5'SS Class:
major
3'SS Sequence:
TTAAATGCATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
65.9
39.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
62.5
0.28
1.1
59.9
45.4
Minor 5ss
31.1
-2.2
3.3
41.5
45.2
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024777
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025198
100862320 - 100926687
64368