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Intron Name: Anas_platyrhynchos_platyrhynchos_1_100980500_100982712_R


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
100980500 - 100982712

Intron Length:
2213

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAGTGTT

5'SS Class:
strong_major

3'SS Sequence:
TGTGTTCATCTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTTCAT

U12 Branch Point Sequence:
GCTTTCATAACT

Flanking Amino Acid:
MRLKSLNNPERCHFSQKAFE

Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
98.4
1.14
0.6
94.3
17.7

Major BPS
87.6
0.93
0.9
89.3
26

Major PPT
71
0.47
1
63.3
43.2

Minor 5ss
38.6
-1.3
3.4
57.8
46.8

Minor BPS
67.3
0.62
1.6
81.33
40.1

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

100980437 - 100998847
18411