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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100982887_100983257_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
100982887 - 100983257
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
CTGACTATAAAT
Flanking Amino Acid:
AGNTIESEVNSEVATFQQYK
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.9
38.6
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
84.7
0.78
0.7
78.2
36
Minor 5ss
34.5
-1.8
3.3
49
47.2
Minor BPS
49.2
0.02
1.8
66.74
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010203
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024021
100978559 - 100998847
20289
ENSAPLT00000010651
100980437 - 100998847
18411