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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_100991490_100994052_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
100991490 - 100994052
Intron Length:
2563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GGATTTGTAATG
Flanking Amino Acid:
KYDGKLGRITGLDPAGPSFT
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
85.5
0.8
0.8
84.6
30.3
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
46.1
-0.4
2
48.78
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010203
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024021
100978559 - 100998847
20289
ENSAPLT00000010651
100980437 - 100998847
18411