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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1010167_1011233_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1010167 - 1011233
Intron Length:
1067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GCTTCATTGATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
73.2
39.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
80.8
0.69
0.7
76.6
25.5
Minor 5ss
39.2
-1.2
3.1
52.5
44.7
Minor BPS
56.4
0.06
1.7
60.32
41.8

Associated Gene:

Gene:
FBH1
Ensembl Gene ID:
ENSAPLG00000009754
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010201
1009974 - 1030196
20223