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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101083059_101083990_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
101083059 - 101083990
Intron Length:
932

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
GTATTTTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GTATTTTTAACA
Flanking Amino Acid:
HEISEGGENLSIGQRQLVCL
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.4
0.62
1
73.5
40.5
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
74.6
0.77
1.1
76.5
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029502
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046678
101080012 - 101084824
4813