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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101128511_101128605_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
101128511 - 101128605
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGAAG
5'SS Class:
major
3'SS Sequence:
TGTATTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
ATTCTGTTAAGC
Flanking Amino Acid:
CYISSENSDNDAQKKQTDK*
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
64.6
40.9
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
83
0.74
0.9
77.4
36.8
Minor 5ss
31.1
-2.2
3.2
35.8
42.4
Minor BPS
48.5
-0.1
2.3
65.52
40.2

Associated Gene:

Gene:
SAMSN1
Ensembl Gene ID:
ENSAPLG00000006805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007070
101128482 - 101150466
21985