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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101128741_101137077_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
101128741 - 101137077
Intron Length:
8337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTGTTCTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
SAIENLQDYDIEQQQTSEAG
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.1
0.79
0.7
81.4
30.6
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
SAMSN1
Ensembl Gene ID:
ENSAPLG00000006805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027483
101128400 - 101185439
57040
ENSAPLT00000020418
101128400 - 101182083
53684
ENSAPLT00000007070
101128482 - 101150466
21985