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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101134409_101137077_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
101134409 - 101137077
Intron Length:
2669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
ATCTTTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCATATTTACTA
Flanking Amino Acid:
SAIENLQDYDKIGMVPCLCI
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
81.6
0.71
0.8
76.3
31.7
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
49.7
-0
1.8
60.45
40.2

Associated Gene:

Gene:
SAMSN1
Ensembl Gene ID:
ENSAPLG00000006805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020264
101133957 - 101163438
29482