About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101137229_101138219_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
101137229 - 101138219
Intron Length:
991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCAAA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GATTGTTTACAT
Flanking Amino Acid:
QELLECVHLQEYASTLLLNG
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.3
74.1
38.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
84
0.77
0.6
80.9
24.2
Minor 5ss
34.1
-1.8
2.7
40
45.6
Minor BPS
47.4
-0.1
2.1
66.9
43.7

Associated Gene:

Gene:
SAMSN1
Ensembl Gene ID:
ENSAPLG00000006805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007070
101128482 - 101150466
21985
ENSAPLT00000027483
101128400 - 101185439
57040
ENSAPLT00000020418
101128400 - 101182083
53684
ENSAPLT00000020264
101133957 - 101163438
29482