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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101138427_101140736_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
101138427 - 101140736
Intron Length:
2310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTTTTTCTATTT
Flanking Amino Acid:
PYDTDSLKIKKGDIIDIICK
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
71.6
40.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
83.8
0.76
0.8
77.1
36.9
Minor 5ss
31.3
-2.1
3.1
38.3
46.6
Minor BPS
49.1
0.01
1.9
71.32
40.7

Associated Gene:

Gene:
SAMSN1
Ensembl Gene ID:
ENSAPLG00000006805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007070
101128482 - 101150466
21985
ENSAPLT00000027483
101128400 - 101185439
57040
ENSAPLT00000020418
101128400 - 101182083
53684
ENSAPLT00000020264
101133957 - 101163438
29482