About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101140889_101142309_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
101140889 - 101142309
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
GATTCTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TTCCACTTGATT
Flanking Amino Acid:
YSLNSGQSSSSGVTSCSDGT
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
75
0.62
1
65.3
41.5
Major PPT
69.8
0.45
1.1
72.3
37.7
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
62.3
0.47
1.5
77.64
38.9

Associated Gene:

Gene:
SAMSN1
Ensembl Gene ID:
ENSAPLG00000006805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007070
101128482 - 101150466
21985
ENSAPLT00000027483
101128400 - 101185439
57040
ENSAPLT00000020418
101128400 - 101182083
53684
ENSAPLT00000020264
101133957 - 101163438
29482