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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101142431_101144461_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
101142431 - 101144461
Intron Length:
2031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAACATG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTTCTTTAAAG
Flanking Amino Acid:
KYIKALSEEMNEEEKDDSDP
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
67.8
43.1
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
84.5
0.78
0.9
86.4
25.2
Minor 5ss
42.5
-0.8
3
54
44.5
Minor BPS
78.4
0.75
1.3
80.63
34.8

Associated Gene:

Gene:
SAMSN1
Ensembl Gene ID:
ENSAPLG00000006805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007070
101128482 - 101150466
21985
ENSAPLT00000027483
101128400 - 101185439
57040
ENSAPLT00000020418
101128400 - 101182083
53684
ENSAPLT00000020264
101133957 - 101163438
29482