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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101144618_101145195_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
101144618 - 101145195
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
TATTTCAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTATTTCAAAT
Flanking Amino Acid:
SVSKTDDSAEVSELETVSDV
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
79.1
34.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
69.8
0.45
1
69
40.6
Minor 5ss
42.7
-0.8
2.5
54.7
42.5
Minor BPS
57.4
0.31
1.6
77.93
38.2

Associated Gene:

Gene:
SAMSN1
Ensembl Gene ID:
ENSAPLG00000006805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020418
101128400 - 101182083
53684
ENSAPLT00000020264
101133957 - 101163438
29482
ENSAPLT00000007070
101128482 - 101150466
21985
ENSAPLT00000027483
101128400 - 101185439
57040