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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1011776_1013057_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1011776 - 1013057
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTATGTTTCACA
Flanking Amino Acid:
CWRDVVSDPLFIPWKKLYHR
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68
42.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
80
0.67
0.9
70.7
39.5
Minor 5ss
40.7
-1
3.1
55
43.2
Minor BPS
53.3
0.1
2.2
71.6
40.9

Associated Gene:

Gene:
FBH1
Ensembl Gene ID:
ENSAPLG00000009754
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010201
1009974 - 1030196
20223