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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_101181976_101185436_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
101181976 - 101185436
Intron Length:
3461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATACTATTAACA
Flanking Amino Acid:
MATEADDKAES
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.9
0.72
1
76.9
42.1
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
60.5
0.32
1.6
69.52
35.7

Associated Gene:

Gene:
SAMSN1
Ensembl Gene ID:
ENSAPLG00000006805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027483
101128400 - 101185439
57040