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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1013189_1013556_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1013189 - 1013556
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TCGTTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
GCTTATTTACAC
Flanking Amino Acid:
QHRGAVLGLIRYVSAIPTNR
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
77.3
0.61
1
72.7
37.5
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
47.2
-0.2
1.9
56.99
41.5

Associated Gene:

Gene:
FBH1
Ensembl Gene ID:
ENSAPLG00000009754
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010201
1009974 - 1030196
20223